NGS kit for the screening for the main molecular biomarkers associated with ALL, AML, CML, MDS, MPN, and other hematologic neoplasms).

Characteristics:

  • NGS panel for the study of the the following oncohematological diseases: acute myeloid leukemia (AML), chronic myeloid leukemia (CML), myeloproliferative neoplasms (MPN), acute lymphoid leukemia (ALL), and myelodysplastic syndromes.
  • Uses a single DNA sample to detect SNVs, indels, gene fusions, CNVs, and pharmacogenetic variants.
  • Bioinformatics analysis with the Data Genomics software and semiautomated generation of reports, including functional and clinical classification of the identified variants.
  • STIDs can be included: Integrated sample identification and tracking system.
  • Based on high sensitivity RNA-probe technology with UMI barcoding (unique molecular identifiers).
  • Coverage (at depth >100x), specificity, sensitivity, repeatability, and reproducibility of this test are greater than 99%. The uniformity of bases covered at >20x is 98.4%.
  • Limit of detection: SNVs and Indels: 2%, CNVs: 20% for copy losses and 10% for copy gains
  • Compliant with quality specifications by the ISO 13485 and ISO 14001 standards regarding manufacturing materials.
  • CE-IVD-marked kit and analysis software.
Technical specifications
  • Compatible sequencing platforms: Illumina NextSeq 500/550/550Dx.
  • Number of reactions: 24.
  • Number of samples per run: 8 samples with a 150-cycle NextSeq MID cartridge.
  • Sequencing: Paired-end (2 x 75 cycles).
  • Sample type: DNA from peripheral blood and bone marrow.
  • Amount of input DNA: 50-100 ng.
  • Fully automated panel for Magnis NGS Prep System Dx equipment.
  • CNV analysis requires that a positive control (REF: IMG-368) be used at least once.

– Sequencing of the coding regions of 76 genes:

  • ARID5B
  • ASXL1
  • ASXL2
  • ATRX
  • BCOR
  • BCORL1
  • BLNK
  • BRAF
  • CALR
  • CBL
  • CDKN2A
  • CDKN2B
  • CEBPA
  • CHIC2
  • CREBBP
  • CSF3R
  • CSNK1A1
  • CUX1
  • DDX3X
  • DDX41
  • DNMT3A
  • EP300
  • ETNK1
  • ETV6
  • EZH2
  • FBXW7
  • FLT3
  • GATA1
  • GATA2 (+I4)
  • GATA3
  • HAVCR2
  • IDH1
  • IDH2
  • IKZF1
  • IL7R
  • JAK1
  • JAK2
  • JAK3
  • KIT
  • KMT2A
  • KMT2C
  • KRAS
  • MPL
  • NF1
  • NFE2
  • NOTCH1
  • NPM1
  • NR3C1
  • NRAS
  • P2RY8
  • PAX5
  • PHF6
  • PIGA
  • PPM1D
  • PTEN
  • PTK2B
  • PTPN11
  • RAD21
  • RB1
  • RUNX1
  • SETBP1
  • SF3B1
  • SH2B3
  • SMC1A
  • SMC3
  • SRP72
  • SRSF2
  • STAG1
  • STAG2
  • STAT5B
  • TET2
  • TP53
  • TYK2
  • U2AF1
  • WT1
  • ZRSR2

– Capture of 27 fusion genes with any possible rearrangement (including previously reported intronic breakpoint regions):

  • ABL1
  • ABL2
  • BCR
  • CBFA2T3
  • CBFB
  • CSF1R
  • EPOR
  • ETV6
  • FGFR1
  • FUS
  • JAK2
  • KMT2A
  • MEF2D
  • MNX1
  • MYH11
  • NPM1
  • NUP214
  • NUP98
  • PDGFRA
  • PDGFRB
  • RARA
  • RBM15
  • RUNX1
  • SET
  • STIL
  • TAL1
  • TCF3

Detection of CNVs throughout the whole genome (detection of hypo- and hyperploidy) or in an entire gene included in the panel. Validation of results and detection of copy-neutral LOH across the genome with a low-density SNP array.

– Detection of pharmacogenetic variants in ABCB1, CEP72, CYP2C9, ITPA, MTHFR, MTRR, NUTD15, PNPLA3, SLCO1B1, and TPMT.