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Oncohematology – Haematology OncoKitDx
NGS kit for the screening for the main molecular biomarkers associated with ALL, AML, CML, MDS, MPN, and other hematologic neoplasms).
Characteristics:
- NGS panel for the study of the the following oncohematological diseases: acute myeloid leukemia (AML), chronic myeloid leukemia (CML), myeloproliferative neoplasms (MPN), acute lymphoid leukemia (ALL), and myelodysplastic syndromes.
- Uses a single DNA sample to detect SNVs, indels, gene fusions, CNVs, and pharmacogenetic variants.
- Bioinformatics analysis with the Data Genomics software and semiautomated generation of reports, including functional and clinical classification of the identified variants.
- STIDs can be included: Integrated sample identification and tracking system.
- Based on high sensitivity RNA-probe technology with UMI barcoding (unique molecular identifiers).
- Coverage (at depth >100x), specificity, sensitivity, repeatability, and reproducibility of this test are greater than 99%. The uniformity of bases covered at >20x is 98.4%.
- Limit of detection: SNVs and Indels: 2%, CNVs: 20% for copy losses and 10% for copy gains
- Compliant with quality specifications by the ISO 13485 and ISO 14001 standards regarding manufacturing materials.
- CE-IVD-marked kit and analysis software.
- Compatible sequencing platforms: Illumina NextSeq 500/550/550Dx.
- Number of reactions: 24.
- Number of samples per run: 8 samples with a 150-cycle NextSeq MID cartridge.
- Sequencing: Paired-end (2 x 75 cycles).
- Sample type: DNA from peripheral blood and bone marrow.
- Amount of input DNA: 50-100 ng.
- Fully automated panel for Magnis NGS Prep System Dx equipment.
- CNV analysis requires that a positive control (REF: IMG-368) be used at least once.
– Sequencing of the coding regions of 76 genes:
- ARID5B
- ASXL1
- ASXL2
- ATRX
- BCOR
- BCORL1
- BLNK
- BRAF
- CALR
- CBL
- CDKN2A
- CDKN2B
- CEBPA
- CHIC2
- CREBBP
- CSF3R
- CSNK1A1
- CUX1
- DDX3X
- DDX41
- DNMT3A
- EP300
- ETNK1
- ETV6
- EZH2
- FBXW7
- FLT3
- GATA1
- GATA2 (+I4)
- GATA3
- HAVCR2
- IDH1
- IDH2
- IKZF1
- IL7R
- JAK1
- JAK2
- JAK3
- KIT
- KMT2A
- KMT2C
- KRAS
- MPL
- NF1
- NFE2
- NOTCH1
- NPM1
- NR3C1
- NRAS
- P2RY8
- PAX5
- PHF6
- PIGA
- PPM1D
- PTEN
- PTK2B
- PTPN11
- RAD21
- RB1
- RUNX1
- SETBP1
- SF3B1
- SH2B3
- SMC1A
- SMC3
- SRP72
- SRSF2
- STAG1
- STAG2
- STAT5B
- TET2
- TP53
- TYK2
- U2AF1
- WT1
- ZRSR2
– Capture of 27 fusion genes with any possible rearrangement (including previously reported intronic breakpoint regions):
- ABL1
- ABL2
- BCR
- CBFA2T3
- CBFB
- CSF1R
- EPOR
- ETV6
- FGFR1
- FUS
- JAK2
- KMT2A
- MEF2D
- MNX1
- MYH11
- NPM1
- NUP214
- NUP98
- PDGFRA
- PDGFRB
- RARA
- RBM15
- RUNX1
- SET
- STIL
- TAL1
- TCF3
– Detection of CNVs throughout the whole genome (detection of hypo- and hyperploidy) or in an entire gene included in the panel. Validation of results and detection of copy-neutral LOH across the genome with a low-density SNP array.
– Detection of pharmacogenetic variants in ABCB1, CEP72, CYP2C9, ITPA, MTHFR, MTRR, NUTD15, PNPLA3, SLCO1B1, and TPMT.
Steps to follow
How to order
1. Download & fill out
Please cover as many fields as possible in both documents
2. Sample collection
Three sample types: saliva, peripheral blood or genomic DNA
3. Pack the sample
Please pack the sample in a way to prevent leakage
4. Send the sample & the request
Please schedule the delivery for Monday–Friday: 8am – 5pm
5. Result: the report
Via: e-mail and/or through the customer portal
Ask us for more information
Oncohematología – Haematology OncoKitDx
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